Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015931637.1_cds_XP_016478395.1_70039
CDS Infomation

[gene=LOC107799765] [db_xref=GeneID:107799765] [protein=endo-1,4-beta-xylanase A-like] [protein_id=XP_016478395.1] [location=join(7215..7289,7377..7439,8081..8448,8531..8690,8805..9157,9712..9889,10140..10673,10870..11985)] [gbkey=CDS]
Sequence

ATGAAGAGGCTATTGGCTTGCAGCTTTGCTCGTCGACTCTTCAAACCTCGTACACAACAC
AGCACACATTTCCAGGAATCAAAGGACAGTATGGAGAAGTCACCAATTATCACTGCCAAC
AACAACTTTGATTCTCAGAGTTCAACGGAAAATGGGGAAGAGATTGGGAGCGATGCTGCT
ACTAACATTGTCCTTAACCATGAATTCTCTGATGGGCTTAACTCGTGGCAGCCCAATTGT
TGTGATGCTTTTGTGGTTCCAGCAAGTTCTGGATACCATAAAGGATTAACAACAGAGAAA
GGCTGTTGTTATGCTGTTGTTACGAATCGTAAGGAATGTTGGCAAGGCTTAGAGCAAGAC
ATTACGAGTGGAGTATCAGCAGGTTTGACTTATACAGTTTCTGCTTGTGTTGGAGCCTCT
GGTACTTTTCAGGGTTCTGTTGATGTCCTCGCCACACTAAAACTAGTGTATCAGAATTCA
GAAACAAACTATCTATTCATTGCAAAAAAATCTGCTTCGAAGGAGTGTTGGGAGATATTG
GAAGGTTTGTTTTCTCTGTCAACTATGCCTGATCAAGTTATATTTTATCTCGAGGGACCT
CCGGCAGGAGCTGACCTGCTCATAAAGTCCGTAGTGATCACATGTCCTAGTTCTACTGCT
TGTGATAGTTCTGGCACATCATCTGTTTCTACCGATGATGATAACATTATAGTAAACCCT
CAATTTGATGATGGCCTCAATAGTTGGTCTGGAAGAGGTTGCAAGGTGGTTTCACATGAC
TCTATGGCAGATGGGAAAATCACTCCAATGTCTGGAAAATACTTTGCCTCTGCAACGGAA
CGCACACAGACCTGGAATGGAATTCAGCAAGATATAACTGGAAGAGTGAAGCGAAAGCTT
GCTTATGAGGTAACTGCTGTTGTCCGGATCTATGGTAACAACGTCACTAACGCAGATCTT
CGCGGTACATTATATGTTAAAGCAGCTGATAACCGCGAACGGTATATTGGCATAGCCAGT
GTCCAAGCCACAGATAAAGACTGGGTGAAGTTGCAAGGGAAGTTTCTTATAAATGACTCG
CCATCTCAGGTTGTTGTCTTTCTAGAAGGTCCACCTCCTGGAACGGATATCCTCCTTAAT
AATTGTGTCATAAAGCATGCATCTAAAGCTCCTCCTCCTTCTCCACCAGTAATTGAGGAT
GCTGCGTTTGGTGTTAATATAGTCACAAATACTAGTTTGAATGATGGCACAAATGGCTGG
TTCCCACTTGGAAACTGTACAATGAGTGTTCAAACAGGCTCACCACATATAATGCCTCCA
ATGGCTAGAGATTCCCTTGGTGCTCATGAGCCTTTAAGTGGCCGCTACATTCTGGTTACA
AATCGTACTCAAAACTGGATGGGTCCTGCTCAGATGATCACAGATAAAGTAAAACTCTAT
TTGACATATCAAGTATCTGCATGGGTTAAAATTGGACAAGCATCGGGACCTCAGAGCGTA
AATGTTGCCCTTGGAGTAGACGGCCAATGGGTAAACGGGGGACAAATTGAGATCAGTGAT
GATAGATGGCATGAAATTGGAGGATCTTTTAGAATTGAGAAGCAAGCAGCTAAGGTTATG
GTTTATATTCAGGGTCCTGCTGCTGGTGTAGACCTAATGGTTGCTGGCCTTCAAATTTTT
CCAGTTGACAGACGTGCACGGTTTAGACACTTGAAGAGGCAAACTGCAAAGATACGCAAG
CGAGACGTCATGTTGAAGTTCTCAGGATCAGATTCAGGCAGTTTGCATGGCACGTTTATT
AGAGTTAGACAACTGCAAAACAGCTTCCCCTTTGGATCAGCCATAAGCAGAACAAACATG
GACAATGAAGACTTCAGTGCCTTCTTTGTCAAGAATTTTAATTGGGCTGTGTTTGGAAAT
GAGCTGAAATGGTACTGGACAGAAGCACAGCAAGGGAATTTCAACTACAAAGATGCTGAT
GAGCTCCTGGACTTCTGCACAAAAAACAACATTCAAGTTCGAGGTCACTGTATCTTTTGG
GAGGTGGTGGGCACTGTTCAGGCATGGGTGCAATCCTTGAACAAAAACGACTTAATGACG
GCTGTTCAAAACCGTCTCACTGGGCTTCTGACACGGTACAAGGGAAAGTTCGAGCATTAT
GATGTGAATAATGAGATGATGCATGGTTCTTTTTACCAGGACAGATTGGGTAAAGAGATC
AGGGTAAACATGTTTAAAACTGCACGTCAATTAGACCCTTCCCCCATCCTATTTGTAAAT
GATTACCATGTTGAGGACGGCAGTGACACCCGATCTTCTCCTGAGAAGTATATTGAGCAT
ATTCTTGATCTCCAAGAGCACGGTGCACCTGTTGGAGGAATAGGAATTCAGGGACATATT
GACAGTCCTGTTGGACCCATTGTATGTTCTGCTCTAGACAAACTTGGTATTCTTGGACTT
CCAATCTGGTTCACTGAAGTTGATGTGTCGTCTGGCAATGAATACATTAGAGCTGATGAT
CTAGAAGTTATGCTTCGGGAAGCTTATGCCCACCCTGCTGTAGAAGGTATAATGTTGTGG
GGGTTCTGGGAGTTGTTCATGAGTCGACCAAATGCACATTTAGTGAATGCAGAAGGTGAC
ATCAATGAAGCTGGAAAAAGGTACCTTGCTCTTAAGCACGAGTGGTTATCCCATTCTCAT
GGTCATATTGATGAACAAGGGCAATTCAGCTTTAGCGGATTCCATGGCTCCTATGAAGTT
GAAGTCATTACTGTTTCGAAGAAAATCACCAAGAAATTTGTTGTTGACAAGGATGATGGT
GCTCTGCTGATCTCTATTGATTTATAG

Peptide Sequence

PEP ID

XP_016478395.1
PEP Infomation

PREDICTED: endo-1,4-beta-xylanase A-like [Nicotiana tabacum]
Sequence

MKRLLACSFARRLFKPRTQHSTHFQESKDSMEKSPIITANNNFDSQSSTENGEEIGSDAA
TNIVLNHEFSDGLNSWQPNCCDAFVVPASSGYHKGLTTEKGCCYAVVTNRKECWQGLEQD
ITSGVSAGLTYTVSACVGASGTFQGSVDVLATLKLVYQNSETNYLFIAKKSASKECWEIL
EGLFSLSTMPDQVIFYLEGPPAGADLLIKSVVITCPSSTACDSSGTSSVSTDDDNIIVNP
QFDDGLNSWSGRGCKVVSHDSMADGKITPMSGKYFASATERTQTWNGIQQDITGRVKRKL
AYEVTAVVRIYGNNVTNADLRGTLYVKAADNRERYIGIASVQATDKDWVKLQGKFLINDS
PSQVVVFLEGPPPGTDILLNNCVIKHASKAPPPSPPVIEDAAFGVNIVTNTSLNDGTNGW
FPLGNCTMSVQTGSPHIMPPMARDSLGAHEPLSGRYILVTNRTQNWMGPAQMITDKVKLY
LTYQVSAWVKIGQASGPQSVNVALGVDGQWVNGGQIEISDDRWHEIGGSFRIEKQAAKVM
VYIQGPAAGVDLMVAGLQIFPVDRRARFRHLKRQTAKIRKRDVMLKFSGSDSGSLHGTFI
RVRQLQNSFPFGSAISRTNMDNEDFSAFFVKNFNWAVFGNELKWYWTEAQQGNFNYKDAD
ELLDFCTKNNIQVRGHCIFWEVVGTVQAWVQSLNKNDLMTAVQNRLTGLLTRYKGKFEHY
DVNNEMMHGSFYQDRLGKEIRVNMFKTARQLDPSPILFVNDYHVEDGSDTRSSPEKYIEH
ILDLQEHGAPVGGIGIQGHIDSPVGPIVCSALDKLGILGLPIWFTEVDVSSGNEYIRADD
LEVMLREAYAHPAVEGIMLWGFWELFMSRPNAHLVNAEGDINEAGKRYLALKHEWLSHSH
GHIDEQGQFSFSGFHGSYEVEVITVSKKITKKFVVDKDDGALLISIDL

Transcript Sequence

Gene sequence data has not been registered.